HPC On-boarding 3-5 October 2023
The Norwegian Research Infrastructure Services (NRIS) is offering an on-boarding hands-on course for new users of HPC systems.
The course is highly recommended for all new users of national HPC systems (Saga, Fram, Betzy) and all interested in the feild.
Targeted Audience: The course is aimed at students, researchers and employees of any background. We assume no prior knowledge of what an HPC is or how to use it. For those who have little experience with UNIX-like operating systems such as Linux or who have never worked on the command line of a terminal, we will offer a hands-on pre-course about UNIX a day before the HPC course.
The course is open to all and free of charge.
Practical Information
This is an online course via zoom. Participants require access to a computer (not provided by the course organisers) with internet connectivity and pre-installed programs to participate in the video meeting of the course (zoom) and to access the HPC systems (eg: ssh).
You can always contact us by sending an email to support@nris.no.
If you want to receive further information about training events, and other announcements about IT resources and services for researchers, there are a couple of information channels you can subscribe to:
users at University of Bergen and affiliated institutes: register to hpcnews@uib.no
users of Sigma2 services: subscribe to Sigma2’s newsletter
Registration
The course is free of charge and is organised by the NRIS. REGISTER HERE.
Please note that we will do the hands-on exercises on one of the NRIS cluster. Those who have accounts on national hpc kindly fill in your username in the registration form. Those who do not have an account on one of the HPC machines yet need to apply for an account at the earliest. See below how to set up an account if you don’t have it already.
Setting up user account
Those who do not have an account on one of the HPC machines yet need to apply for an account at the earliest. The application page is available here and and documentation for the application procedure is available here. You are applying for an HPC account. For the project, please select NN9970K: Training and Outreach, choose Saga and Fram under Resources, set the account start date as the date of apply and the account end date to one month after the course , ie 2023-11-15. User account should be ready and active before the course. You should use your institutional email id while applying for user account.
Time, date (all times CEST)
Date |
Time |
Topic |
---|---|---|
Tue 03.10 |
09:00 - 12:30 |
Linux on HPC context |
Wed 04.10 |
09:00 - 12:30 |
HPC On-boarding day 1 |
Thu 05.10 |
09:00 - 12:30 |
HPC On-boarding day2 |
Login Help for everybody - 02 October 13:00-14:00
Day0 - UNIX for HPC (optional 03 October, Tuesday)
09:00-09:10 - Welcome, Practical information & icebreaker question
09:10-09:40 - The terminal and remote login (sabry & Maiken)
09:40-09:55 - Moving around and looking at things (sabry & Maiken)
09:55-10:05 - Break
10:05-10:20 - Moving around and looking at things (exercise) (Maiken & Sabry)
10:20-10:35 - Finding things (Maiken & Sabry)
10:35-10:50 - Finding things (exercise)
10:50-11:00 - Break
11:00-11:30 - Create/modify files (Maiken & Bente)
11:30-12:00 - Composing commands with pipes (Radovan & Maiken)
12:00-12:30 - Scripting (Maiken & Dhanya)
Day1 - HPC Intro (04 October Wednesday)
09:00-09:10 - Welcome, Practical information &icebreaker question
09:10-09:30 - Why use a Cluster? (Sabry & Dhanya)
09:30-10:00 - Working on a remote HPC system (Sabry & Dhanya)
10:00-10:15 - Break
10:15-11:00 - Scheduling jobs (Sabry & Dhanya)
11:00-11:30 - Scheduling job (exercise)
11:30-11:45 - Break
11:45-12:15 - Transferring files (Bente & Morten)
12:15-12:30 - Q&A & Discussion
Day2 - HPC Intro (05 October Thursday)
09:00-09:10 - Recap & ice breaker question
09:10-09:40 - Accessing Software (Bjørn / Radovan)
09:40-10:00 - Accessing Software (exercise)
10:00-10:15 - Break
10:15-11:00 - Compute and storage quota (Dhanya & Bjørn)
11:00-11:30 - Using shared resources responsibly (Espen & Bente)
11:30-11:45 - Break
11:45-12:15 - How to ask for help (Radovan & Rafael)
Course material
Course material will be mostly based on Unix for HPC and HPC-Intro
Code of Conduct
All participants in our course are expected to show respect and courtesy to others. We follow carpentry code of conduct. If you believe someone is violating the Code of Conduct, we ask that you either report to the zoom host right away or write to the training team.
Instructors
Sabry Razick
Radovan Bast
Maiken Pedersen
Dhanya Pushpadas
Bjørn Lindi
Espen Tangen
Morten Ledum
Bente Barge
Rafael Santos
Coordinator
Dhanya Pushpadas